SlimMD Database
SARS-CoV2 spike protein in open conformation (PDB ID 6VYB) 10μs
Category: SARS-CoV-2
Downloaded: 692
| Total length of simulation: | 10 microseconds | Simulation software: | Desmond |
| Time between snapshots: | 10.2 nanoseconds | MD forcefield: | DES-Amber |
| File formats: | psf (charmm topology file) and dcd (NAMD trajectory file). | ||
| Simulation details: | 0.15mM NaCl Details of the original trajectory can be found in "before_slimMD_desres_README.txt". The desres ID of this simulation is 11021571. |
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| Trajectory donated by: | DESRES - slimmed by CCPBioSim. | ||
| Citations: |
The use of this simulation data in any published work should be acknowledged by including a citation to: D. E. Shaw Research, "Molecular Dynamics Simulations Related to SARS-CoV-2," D. E. Shaw Research Technical Data, 2020. http://www.deshawresearch.com/resources_sarscov2.html Please also acknowledge CCPBioSim if you download from slimMD. |
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